Comparisons of envelope through 5B sequences of infectious bronchitis coronaviruses indicates recombination occurs in the envelope and membrane genes.
Identifieur interne : 001800 ( Main/Exploration ); précédent : 001799; suivant : 001801Comparisons of envelope through 5B sequences of infectious bronchitis coronaviruses indicates recombination occurs in the envelope and membrane genes.
Auteurs : Judy Elaine Brooks [États-Unis] ; Aaron Cameron Rainer ; Rebecca Lynn Parr ; Peter Woolcock ; Fred Hoerr ; Ellen Whited CollissonSource :
- Virus research [ 0168-1702 ] ; 2004.
Descripteurs français
- KwdFr :
- Alabama, Alignement de séquences, Amorces ADN, Animaux, Cadres ouverts de lecture, Californie, Données de séquences moléculaires, Embryon de poulet, Infections à coronavirus (diagnostic), Infections à coronavirus (médecine vétérinaire), Maladies de la volaille (virologie), Phylogénie, Protéines de l'enveloppe virale (), Protéines de l'enveloppe virale (génétique), Protéines membranaires (), Protéines membranaires (génétique), Protéines virales (), Protéines virales (génétique), RT-PCR, Recombinaison génétique, Réaction de polymérisation en chaîne, Similitude de séquences d'acides nucléiques, Séquence conservée, Séquence nucléotidique, Virus de la bronchite infectieuse (), Virus de la bronchite infectieuse (génétique), Virus de la bronchite infectieuse (isolement et purification).
- MESH :
- diagnostic : Infections à coronavirus.
- génétique : Protéines de l'enveloppe virale, Protéines membranaires, Protéines virales, Virus de la bronchite infectieuse.
- isolement et purification : Virus de la bronchite infectieuse.
- médecine vétérinaire : Infections à coronavirus.
- virologie : Maladies de la volaille.
- Alabama, Alignement de séquences, Amorces ADN, Animaux, Cadres ouverts de lecture, Californie, Données de séquences moléculaires, Embryon de poulet, Phylogénie, Protéines de l'enveloppe virale, Protéines membranaires, Protéines virales, RT-PCR, Recombinaison génétique, Réaction de polymérisation en chaîne, Similitude de séquences d'acides nucléiques, Séquence conservée, Séquence nucléotidique, Virus de la bronchite infectieuse.
English descriptors
- KwdEn :
- Alabama, Animals, Base Sequence, California, Chick Embryo, Conserved Sequence, Coronavirus Infections (diagnosis), Coronavirus Infections (veterinary), DNA Primers, Infectious bronchitis virus (classification), Infectious bronchitis virus (genetics), Infectious bronchitis virus (isolation & purification), Membrane Proteins (chemistry), Membrane Proteins (genetics), Molecular Sequence Data, Open Reading Frames, Phylogeny, Polymerase Chain Reaction, Poultry Diseases (virology), Recombination, Genetic, Reverse Transcriptase Polymerase Chain Reaction, Sequence Alignment, Sequence Homology, Nucleic Acid, Viral Envelope Proteins (chemistry), Viral Envelope Proteins (genetics), Viral Proteins (chemistry), Viral Proteins (genetics).
- MESH :
- chemical , chemistry : Membrane Proteins, Viral Envelope Proteins, Viral Proteins.
- chemical , genetics : Membrane Proteins, Viral Envelope Proteins, Viral Proteins.
- chemical : DNA Primers.
- geographic : Alabama, California.
- classification : Infectious bronchitis virus.
- diagnosis : Coronavirus Infections.
- genetics : Infectious bronchitis virus.
- isolation & purification : Infectious bronchitis virus.
- veterinary : Coronavirus Infections.
- virology : Poultry Diseases.
- Animals, Base Sequence, Chick Embryo, Conserved Sequence, Molecular Sequence Data, Open Reading Frames, Phylogeny, Polymerase Chain Reaction, Recombination, Genetic, Reverse Transcriptase Polymerase Chain Reaction, Sequence Alignment, Sequence Homology, Nucleic Acid.
Abstract
A 1.78 kb sequence, including the E, M, 5a and 5b genes, and the intergenic region between the M and 5a genes, of six US strains of infectious bronchitis (corona)virus (IBV) were sequenced and compared to the published sequences for two additional strains. The overall identities as determined through pairwise analyses of nucleotide sequences of the entire 1.78kb region ranged from 90 to 99%, with the 5b open reading frame (ORF) having the greatest identity (94-99%) while the identities of the E, 5a and M ORFs ranged from 87 to 100%. Nucleotide sequencing of recent field isolates from Alabama (Ala1) and California (Cal3) revealed distinct shifts in homology in the M gene, indicating two apparent recombination events between the Holland 52/Mass41-like strain and an Ark-like strain, both origins of commonly used vaccine strains. Putative sites of recombination could also be identified in both the E and M ORFs of laboratory strains of IBV.
DOI: 10.1016/j.virusres.2003.11.016
PubMed: 15019237
Affiliations:
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Le document en format XML
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(isolation & purification)</term><term>Membrane Proteins (chemistry)</term><term>Membrane Proteins (genetics)</term><term>Molecular Sequence Data</term><term>Open Reading Frames</term><term>Phylogeny</term><term>Polymerase Chain Reaction</term><term>Poultry Diseases (virology)</term><term>Recombination, Genetic</term><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>Sequence Alignment</term><term>Sequence Homology, Nucleic Acid</term><term>Viral Envelope Proteins (chemistry)</term><term>Viral Envelope Proteins (genetics)</term><term>Viral Proteins (chemistry)</term><term>Viral Proteins (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Alabama</term><term>Alignement de séquences</term><term>Amorces ADN</term><term>Animaux</term><term>Cadres ouverts de lecture</term><term>Californie</term><term>Données de séquences moléculaires</term><term>Embryon de poulet</term><term>Infections à coronavirus (diagnostic)</term><term>Infections à coronavirus 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Reaction</term><term>Recombination, Genetic</term><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>Sequence Alignment</term><term>Sequence Homology, Nucleic Acid</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Alabama</term><term>Alignement de séquences</term><term>Amorces ADN</term><term>Animaux</term><term>Cadres ouverts de lecture</term><term>Californie</term><term>Données de séquences moléculaires</term><term>Embryon de poulet</term><term>Phylogénie</term><term>Protéines de l'enveloppe virale</term><term>Protéines membranaires</term><term>Protéines virales</term><term>RT-PCR</term><term>Recombinaison génétique</term><term>Réaction de polymérisation en chaîne</term><term>Similitude de séquences d'acides nucléiques</term><term>Séquence conservée</term><term>Séquence nucléotidique</term><term>Virus de la bronchite infectieuse</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A 1.78 kb sequence, including the E, M, 5a and 5b genes, and the intergenic region between the M and 5a genes, of six US strains of infectious bronchitis (corona)virus (IBV) were sequenced and compared to the published sequences for two additional strains. The overall identities as determined through pairwise analyses of nucleotide sequences of the entire 1.78kb region ranged from 90 to 99%, with the 5b open reading frame (ORF) having the greatest identity (94-99%) while the identities of the E, 5a and M ORFs ranged from 87 to 100%. Nucleotide sequencing of recent field isolates from Alabama (Ala1) and California (Cal3) revealed distinct shifts in homology in the M gene, indicating two apparent recombination events between the Holland 52/Mass41-like strain and an Ark-like strain, both origins of commonly used vaccine strains. Putative sites of recombination could also be identified in both the E and M ORFs of laboratory strains of IBV.</div></front></TEI><affiliations><list><country><li>États-Unis</li></country><region><li>Texas</li></region></list><tree><noCountry><name sortKey="Collisson, Ellen Whited" sort="Collisson, Ellen Whited" uniqKey="Collisson E" first="Ellen Whited" last="Collisson">Ellen Whited Collisson</name><name sortKey="Hoerr, Fred" sort="Hoerr, Fred" uniqKey="Hoerr F" first="Fred" last="Hoerr">Fred Hoerr</name><name sortKey="Parr, Rebecca Lynn" sort="Parr, Rebecca Lynn" uniqKey="Parr R" first="Rebecca Lynn" last="Parr">Rebecca Lynn Parr</name><name sortKey="Rainer, Aaron Cameron" sort="Rainer, Aaron Cameron" uniqKey="Rainer A" first="Aaron Cameron" last="Rainer">Aaron Cameron Rainer</name><name sortKey="Woolcock, Peter" sort="Woolcock, Peter" uniqKey="Woolcock P" first="Peter" last="Woolcock">Peter Woolcock</name></noCountry><country name="États-Unis"><region name="Texas"><name sortKey="Brooks, Judy Elaine" sort="Brooks, Judy Elaine" uniqKey="Brooks J" first="Judy Elaine" last="Brooks">Judy Elaine Brooks</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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